Transcript: lnc-SGTB-2:3

Basic information

LNCipedia transcript ID: lnc-SGTB-2:3 
LNCipedia gene ID: lnc-SGTB-2
Location (hg38): chr5:66143508-66144181
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 674 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000080057.1|FTMT21800004353.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -55.652 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SGTB-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SGTB-2:3
5.0 lnc-SGTB-2:3
5.1 lnc-TRIM23-9:2
5.2 lnc-SGTB-2:3