Transcript: lnc-SH2D3A-2:1

Basic information

LNCipedia transcript ID: lnc-SH2D3A-2:1 
LNCipedia gene ID: lnc-SH2D3A-2
Ensembl Gene ID: ENSG00000269680
Ensembl Transcript ID: ENST00000594056
Location (hg38): chr19:6748293-6751467
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 686 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT060790; ENST00000594056.1
Alternative gene names: ENSG00000269680.1; CTD-3128G10.6; AC008760.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.6454 non-coding 
CPAT coding probability 29.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH2D3A-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SH2D3A-2:1
4.0 lnc-SH2D3A-2:1
4.1 lnc-SH2D3A-2:1
5.0 lnc-SH2D3A-2:1
5.1 lnc-TIMM44-33:1
5.2 lnc-SH2D3A-2:1