Transcript: lnc-SH2D6-4:2

Basic information

LNCipedia transcript ID: lnc-SH2D6-4:2 
LNCipedia gene ID: lnc-SH2D6-4
Location (hg38): chr2:85455779-85457715
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 235 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_16614_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.8259 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH2D6-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SH2D6-4:2
4.0 lnc-SH2D6-4:2
4.1 lnc-SH2D6-4:2
5.0 lnc-SH2D6-4:2
5.1 lnc-POLE4-180:2
5.2 lnc-SH2D6-4:2