Transcript: lnc-SH2D7-2:3

Basic information

LNCipedia transcript ID: lnc-SH2D7-2:3 
LNCipedia gene ID: lnc-SH2D7-2
Location (hg38): chr15:78131567-78147160
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 910 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023472; NONHSAT047540
Alternative gene names: XLOC_011319; linc-IDH3A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.857 non-coding 
CPAT coding probability 7.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH2D7-2:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SH2D7-1:1
3.1 lnc-SH2D7-2:1
4.0 lnc-IDH3A-2:2
4.1 lnc-IDH3A-2:2
5.0 lnc-IDH3A-2:2
5.1 lnc-CRABP1-5:2
5.2 lnc-SH2D7-2:3