Transcript: lnc-SH3D21-3:1

Basic information

LNCipedia transcript ID: lnc-SH3D21-3:1 
LNCipedia gene ID: lnc-SH3D21-3
Ensembl Gene ID: ENSG00000116883
Ensembl Transcript ID: ENST00000373137
Location (hg38): chr1:36323734-36329221
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1838 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000373137.2
Alternative gene names: ENSG00000116883.8; RP11-268J15.5; AL591845.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 7.7521 non-coding 
CPAT coding probability 5.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3D21-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AL591845.1-3:2
4.1 lnc-AL591845.1-3:2
5.0 lnc-AL591845.1-3:2
5.1 lnc-NCDN-29:2
5.2 lnc-SH3D21-3:1