Transcript: lnc-SH3D21-7:6

Basic information

LNCipedia transcript ID: lnc-SH3D21-7:6 
LNCipedia gene ID: lnc-SH3D21-7
Location (hg38): chr1:36386702-36388931
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2046 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000112270.1|FTMT20300041400.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -52.3152 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SH3D21-7:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AL591845.1-7:6
5.0 lnc-AL591845.1-7:6
5.1 lnc-NCDN-30:6
5.2 lnc-SH3D21-7:6