Transcript: lnc-SHANK2-1:11

Basic information

LNCipedia transcript ID: lnc-SHANK2-1:11 
LNCipedia gene ID: lnc-SHANK2-1
Location (hg38): chr11:70372246-70398369
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 561 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000246889.2|ENST00000530690.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -60.2537 non-coding 
CPAT coding probability 13.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHANK2-1:11 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SHANK2-1:11
5.0 lnc-SHANK2-1:11
5.1 lnc-KMT5B-41:9
5.2 lnc-SHANK2-1:11