Transcript: lnc-SHANK2-2:1

Basic information

LNCipedia transcript ID: lnc-SHANK2-2:1 
LNCipedia gene ID: lnc-SHANK2-2
Ensembl Gene ID: ENSG00000254495
Ensembl Transcript ID: ENST00000324630
Location (hg38): chr11:70358198-70358677
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 394 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000324630.5; AP000487.4-001; OTTHUMT00000393932.1; NONHSAT022653
Alternative gene names: ENSG00000254495.1; AP000487.4; OTTHUMG00000167269.1; AP000487.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHANK2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SHANK2-2:1
4.0 lnc-SHANK2-2:1
4.1 lnc-SHANK2-2:1
5.0 lnc-SHANK2-2:1
5.1 lnc-KMT5B-38:1
5.2 lnc-SHANK2-2:1