Transcript: lnc-SHC3-1:1

Basic information

LNCipedia transcript ID: lnc-SHC3-1:1 
LNCipedia gene ID: lnc-SHC3-1
Location (hg38): chr9:89010034-89010478
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 445 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000439796; ENST00000439796.1; RP11-82L18.4-001; OTTHUMT00000052985.1; NONHSAT132942
Alternative gene names: ENSG00000231632; RP11-82L18.4; ENSG00000231632.1; OTTHUMG00000020178.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -315.6061 non-coding 
CPAT coding probability 1.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHC3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHC3-1:1
3.1 lnc-SHC3-1:1
4.0 lnc-SHC3-1:1
4.1 lnc-SHC3-1:1
5.0 lnc-SHC3-1:1
5.1 lnc-SEMA4D-11:1
5.2 lnc-SHC3-1:1