Transcript: lnc-SHCBP1-1:1

Basic information

LNCipedia transcript ID: lnc-SHCBP1-1:1 
LNCipedia gene ID: lnc-SHCBP1-1
Ensembl Gene ID: ENSG00000261512
Ensembl Transcript ID: ENST00000574180
Location (hg38): chr16:46622861-46624451
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1591 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000574180.1; RP11-46D6.1-002; OTTHUMT00000439485.1; NONHSAT142255
Alternative gene names: ENSG00000261512.2; RP11-46D6.1; OTTHUMG00000175597.2; AC092368.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 27.0685 non-coding 
CPAT coding probability 44.35% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SHCBP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SHCBP1-1:1
4.0 lnc-SHCBP1-1:1
4.1 lnc-SHCBP1-1:1
5.0 lnc-SHCBP1-1:1
5.1 lnc-CFAP20-182:1
5.2 lnc-SHCBP1-1:1