Transcript: lnc-SHCBP1-2:1

Basic information

LNCipedia transcript ID: lnc-SHCBP1-2:1 
LNCipedia gene ID: lnc-SHCBP1-2
Ensembl Gene ID: ENSG00000261131
Ensembl Transcript ID: ENST00000569353
Location (hg38): chr16:46660696-46661591
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 321 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569353.1; RP11-93O14.2-001; OTTHUMT00000430601.1; NONHSAT142258
Alternative gene names: ENSG00000261131.1; RP11-93O14.2; OTTHUMG00000175600.1; AC012186.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -230.7445 non-coding 
CPAT coding probability 0.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHCBP1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SHCBP1-2:1
4.0 lnc-SHCBP1-2:1
4.1 lnc-SHCBP1-2:1
5.0 lnc-SHCBP1-2:1
5.1 lnc-CFAP20-181:1
5.2 lnc-SHCBP1-2:1