Transcript: lnc-SHF-3:1

Basic information

LNCipedia transcript ID: lnc-SHF-3:1 
LNCipedia gene ID: lnc-SHF-3
Ensembl Gene ID: ENSG00000259520
Ensembl Transcript ID: ENST00000561404
Location (hg38): chr15:45255124-45279251
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 529 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561404.1; CTD-2651B20.3-002; OTTHUMT00000416354.1; NONHSAT042231
Alternative gene names: ENSG00000259520.1; CTD-2651B20.3; OTTHUMG00000172002.1; ENSG00000259520.5; AC051619.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHF-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SHF-3:1
4.0 lnc-SHF-3:1
4.1 lnc-SHF-3:1
5.0 lnc-SHF-3:1
5.1 lnc-SERINC4-32:1
5.2 lnc-SHF-3:1