Transcript: lnc-SHF-3:12

Basic information

LNCipedia transcript ID: lnc-SHF-3:12 
LNCipedia gene ID: lnc-SHF-3
Location (hg38): chr15:45253506-45279227
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 545 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000259520.1|ENST00000560344.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -402.4936 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHF-3:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SHF-3:12
5.0 lnc-SHF-3:12
5.1 lnc-SERINC4-32:9
5.2 lnc-SHF-3:12