Transcript: lnc-SHF-3:2

Basic information

LNCipedia transcript ID: lnc-SHF-3:2 
LNCipedia gene ID: lnc-SHF-3
Ensembl Gene ID: ENSG00000259520
Ensembl Transcript ID: ENST00000560344
Location (hg38): chr15:45253506-45279227
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 545 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560344.1; CTD-2651B20.3-001; OTTHUMT00000416353.1; NONHSAT042230; ENST00000560344.5
Alternative gene names: ENSG00000259520.1; CTD-2651B20.3; OTTHUMG00000172002.1; ENSG00000259520.5; AC051619.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -402.4936 non-coding 
CPAT coding probability 1.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHF-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SHF-3:2
4.0 lnc-SHF-3:2
4.1 lnc-SHF-3:2
5.0 lnc-SHF-3:2
5.1 lnc-SERINC4-32:3
5.2 lnc-SHF-3:2