Transcript: lnc-SHF-3:3

Basic information

LNCipedia transcript ID: lnc-SHF-3:3 
LNCipedia gene ID: lnc-SHF-3
Location (hg38): chr15:45251686-45256002
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 630 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000559003.1; CTD-2651B20.3-003; OTTHUMT00000416352.1; NONHSAT042229
Alternative gene names: ENSG00000259520.1; CTD-2651B20.3; OTTHUMG00000172002.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.2887 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHF-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SHF-3:3
4.0 lnc-SHF-3:3
4.1 lnc-SHF-3:3
5.0 lnc-SHF-3:3
5.1 lnc-SERINC4-32:11
5.2 lnc-SHF-3:3