Transcript: lnc-SHISA9-4:1

Basic information

LNCipedia transcript ID: lnc-SHISA9-4:1 
LNCipedia gene ID: lnc-SHISA9-4
Ensembl Gene ID: ENSG00000260601
Ensembl Transcript ID: ENST00000565359
Location (hg38): chr16:12545482-12546684
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 520 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565359.1; RP11-552C15.1-001; OTTHUMT00000422632.1; NONHSAT140624
Alternative gene names: ENSG00000260601.1; RP11-552C15.1; OTTHUMG00000173261.1; AC131391.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.3278 non-coding 
CPAT coding probability 3.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SHISA9-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SHISA9-4:1
4.0 lnc-SHISA9-4:1
4.1 lnc-SHISA9-4:1
5.0 lnc-SHISA9-4:1
5.1 lnc-PDXDC1-28:1
5.2 lnc-SHISA9-4:1