Transcript: lnc-SIGLEC5-1:1

Basic information

LNCipedia transcript ID: lnc-SIGLEC5-1:1 
LNCipedia gene ID: lnc-SIGLEC5-1
Location (hg38): chr19:51630101-51645545
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 553 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000534261.1; AC018755.13-001; OTTHUMT00000413445.1
Alternative gene names: ENSG00000258669.1; AC018755.13; OTTHUMG00000171449.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.8968 non-coding 
CPAT coding probability 12.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIGLEC5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIGLEC14-1:1
4.0 lnc-SIGLEC14-1:1
4.1 lnc-SIGLEC14-1:1
5.0 lnc-SIGLEC14-1:1
5.1 lnc-FAM71E1-49:1
5.2 lnc-SIGLEC5-1:1