Transcript: lnc-SIN3A-6:1

Basic information

LNCipedia transcript ID: lnc-SIN3A-6:1 
LNCipedia gene ID: lnc-SIN3A-6
Location (hg38): chr15:75355210-75355746
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 343 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000563660.1; RP11-817O13.6-001; OTTHUMT00000420004.1; NONHSAT047329
Alternative gene names: ENSG00000260591.1; RP11-817O13.6; OTTHUMG00000172699.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIN3A-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAN2C1-1:1
4.0 lnc-MAN2C1-1:1
4.1 lnc-MAN2C1-1:1
5.0 lnc-MAN2C1-1:1
5.1 lnc-PEAK1-39:1
5.2 lnc-SIN3A-6:1