Transcript: lnc-SINHCAF-10:1

Basic information

LNCipedia transcript ID: lnc-SINHCAF-10:1 
LNCipedia gene ID: lnc-SINHCAF-10
Ensembl Gene ID: ENSG00000275769
Ensembl Transcript ID: ENST00000621354
Location (hg38): chr12:31443792-31444208
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 417 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621354.1
Alternative gene names: ENSG00000275769.1; RP11-771K4.3; AC068792.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -122.2226 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SINHCAF-10:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FAM60A-10:1
4.1 lnc-FAM60A-10:1
5.0 lnc-FAM60A-10:1
5.1 lnc-RPAP3-107:1
5.2 lnc-SINHCAF-10:1