Transcript: lnc-SIPA1L3-2:2

Basic information

LNCipedia transcript ID: lnc-SIPA1L3-2:2 
LNCipedia gene ID: lnc-SIPA1L3-2
Location (hg38): chr19:38245218-38249578
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2302 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_1681_chr19:38735857-38738495_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 28.2336 non-coding 
CPAT coding probability 1.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIPA1L3-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SPINT2-2:1
4.0 lnc-SPINT2-2:1
4.1 lnc-SPINT2-2:1
5.0 lnc-SPINT2-2:1
5.1 lnc-ZNF540-24:1
5.2 lnc-SIPA1L3-2:2