Transcript: lnc-SIRT1-2:1

Basic information

LNCipedia transcript ID: lnc-SIRT1-2:1 
LNCipedia gene ID: lnc-SIRT1-2
Ensembl Gene ID: ENSG00000225299
Ensembl Transcript ID: ENST00000422963
Location (hg38): chr10:67052609-67055028
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 505 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422963.1; RP11-344A5.1-001; OTTHUMT00000048276.1; NONHSAT013673
Alternative gene names: ENSG00000225299.1; RP11-344A5.1; OTTHUMG00000018331.1; AL139240.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.0937 non-coding 
CPAT coding probability 0.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIRT1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIRT1-2:1
4.0 lnc-SIRT1-2:1
4.1 lnc-SIRT1-2:1
5.0 lnc-SIRT1-2:1
5.1 lnc-MTRNR2L5-70:1
5.2 lnc-SIRT1-2:1