Transcript: lnc-SIX3-1:2

Basic information

LNCipedia transcript ID: lnc-SIX3-1:2 
LNCipedia gene ID: lnc-SIX3-1
Location (hg38): chr2:44954664-44968758
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2681 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011
Alternative transcript names: TCONS_00002884; ENST00000425325
Alternative gene names: XLOC_001451; linc-PRKCE-4; ENSG00000225156; AC012354.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.0729 non-coding 
CPAT coding probability 2.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SIX3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SIX3-1:1
3.1 lnc-SIX3-1:2
4.0 lnc-SIX3-1:2
4.1 lnc-SIX3-1:2
5.0 lnc-SIX3-1:2
5.1 lnc-EPAS1-11:6
5.2 lnc-SIX3-1:2