Transcript: lnc-SLC10A6-1:2

Basic information

LNCipedia transcript ID: lnc-SLC10A6-1:2 
LNCipedia gene ID: lnc-SLC10A6-1
Location (hg38): chr4:86012296-86013874
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1579 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000564854.1; RP13-514E23.1-001; OTTHUMT00000431715.1; NONHSAT097267
Alternative gene names: ENSG00000261496.1; RP13-514E23.1; OTTHUMG00000176279.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.7724 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC10A6-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAPK10-1:1
4.0 lnc-MAPK10-1:1
4.1 lnc-MAPK10-1:1
5.0 lnc-MAPK10-1:1
5.1 lnc-SPARCL1-19:1
5.2 lnc-SLC10A6-1:2