Transcript: lnc-SLC12A7-5:1

Basic information

LNCipedia transcript ID: lnc-SLC12A7-5:1 
LNCipedia gene ID: lnc-SLC12A7-5
Ensembl Gene ID: ENSG00000249201
Ensembl Transcript ID: ENST00000514376
Location (hg38): chr5:1173141-1178605
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1757 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514376.1; CTD-3080P12.3-003; OTTHUMT00000366443.1; NONHSAT099986
Alternative gene names: ENSG00000249201.2; CTD-3080P12.3; OTTHUMG00000161928.2; AC114291.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 60.3446 non-coding 
CPAT coding probability 10.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC12A7-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC12A7-5:1
4.0 lnc-SLC12A7-5:1
4.1 lnc-SLC12A7-5:1
5.0 lnc-SLC12A7-5:1
5.1 lnc-IRX2-23:12
5.2 lnc-SLC12A7-5:1