Transcript: lnc-SLC12A8-3:1

Basic information

LNCipedia transcript ID: lnc-SLC12A8-3:1 
LNCipedia gene ID: lnc-SLC12A8-3
Location (hg38): chr3:125069796-125079534
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3524 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00007245; NONHSAT091583
Alternative gene names: XLOC_003228; linc-HEG1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.8023 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC12A8-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC12A8-1:1
3.1 lnc-SLC12A8-1:1
4.0 lnc-SLC12A8-1:1
4.1 lnc-SLC12A8-1:1
5.0 lnc-SLC12A8-1:1
5.1 lnc-MUC13-9:1
5.2 lnc-SLC12A8-3:1