Transcript: lnc-SLC14A1-6:5

Basic information

LNCipedia transcript ID: lnc-SLC14A1-6:5 
LNCipedia gene ID: lnc-SLC14A1-6
Ensembl Gene ID: ENSG00000266988
Ensembl Transcript ID: ENST00000588517
Location (hg38): chr18:45483370-45485316
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 259 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059109; ENST00000588517.1
Alternative gene names: ENSG00000266988.1; RP11-749H17.1; ENSG00000266988.5; AC021517.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.9942 non-coding 
CPAT coding probability 1.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC14A1-6:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC14A2-2:5
4.0 lnc-SLC14A2-2:5
4.1 lnc-SLC14A2-2:5
5.0 lnc-SLC14A2-2:5
5.1 lnc-CTIF-58:5
5.2 lnc-SLC14A1-6:5