Transcript: lnc-SLC15A4-3:1

Basic information

LNCipedia transcript ID: lnc-SLC15A4-3:1 
LNCipedia gene ID: lnc-SLC15A4-3
Ensembl Gene ID: ENSG00000256085
Ensembl Transcript ID: ENST00000539362
Location (hg38): chr12:129521303-129522763
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 739 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000539362; ENST00000539362.1; RP11-337L12.1-001; OTTHUMT00000399602.1; NONHSAT031936
Alternative gene names: ENSG00000256085; RP11-337L12.1; ENSG00000256085.1; OTTHUMG00000168404.1; AC130404.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -183.5189 non-coding 
CPAT coding probability 10.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC15A4-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC15A4-3:1
3.1 lnc-SLC15A4-3:1
4.0 lnc-SLC15A4-3:1
4.1 lnc-SLC15A4-3:1
5.0 lnc-SLC15A4-3:1
5.1 lnc-RIMBP2-23:1
5.2 lnc-SLC15A4-3:1