Transcript: lnc-SLC16A1-2:1

Basic information

LNCipedia transcript ID: lnc-SLC16A1-2:1 
LNCipedia gene ID: lnc-SLC16A1-2
Ensembl Gene ID: ENSG00000238198
Ensembl Transcript ID: ENST00000421157
Location (hg38): chr1:113011687-113073105
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2459 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421157; ENST00000421157.1; RP11-31F15.2-001; OTTHUMT00000033545.1; NONHSAT005310
Alternative gene names: ENSG00000238198; RP11-31F15.2; ENSG00000238198.1; OTTHUMG00000012130.1; AL357055.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.7194 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC16A1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC16A1-2:1
3.1 lnc-SLC16A1-2:1
4.0 lnc-SLC16A1-2:1
4.1 lnc-SLC16A1-2:1
5.0 lnc-SLC16A1-2:1
5.1 lnc-PHTF1-2:2
5.2 lnc-SLC16A1-2:1