Transcript: lnc-SLC16A1-2:2

Basic information

LNCipedia transcript ID: lnc-SLC16A1-2:2 
LNCipedia gene ID: lnc-SLC16A1-2
RefSeq ID: NR_103777
Location (hg38): chr1:113011687-113073102
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2456 bp
Exons: 3
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000096; NR_103777; NR_103777.1
Alternative gene names: XLOC_000967; linc-SLC16A1-1; LOC100996251


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 29.7194 non-coding 
CPAT coding probability 0.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC16A1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC16A1-2:2
3.1 lnc-SLC16A1-2:2
4.0 lnc-SLC16A1-2:2
4.1 lnc-SLC16A1-2:2
5.0 lnc-SLC16A1-2:2
5.1 lnc-PHTF1-2:3
5.2 lnc-SLC16A1-2:2