Transcript: lnc-SLC16A1-6:3

Basic information

LNCipedia transcript ID: lnc-SLC16A1-6:3 
LNCipedia gene ID: lnc-SLC16A1-6
RefSeq ID: NR_038846
Location (hg38): chr1:113196781-113206253
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2172 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038846.1
Alternative gene names: LOC643441


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -80.0757 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC16A1-6:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-PHTF1-6:2
5.1 lnc-PHTF1-6:2
5.2 lnc-SLC16A1-6:3