Transcript: lnc-SLC16A11-7:20

Basic information

LNCipedia transcript ID: lnc-SLC16A11-7:20 
HGNC Gene Symbol: lnc-SLC16A11-7    
HGNC Full Gene Name: ALOX12 antisense RNA 1
Ensembl Gene ID: ENSG00000215067
Ensembl Transcript ID: ENST00000399541
Location (hg38): chr17:6985109-7012334
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 665 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000399541.6
Alternative gene names: ENSG00000215067.9; ALOX12-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -18.3815 non-coding 
CPAT coding probability 8.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC16A11-7:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC027763.2.1-1:13
4.1 lnc-AC027763.2.1-1:13
5.0 lnc-AC027763.2.1-1:13
5.1 lnc-PHF23-13:20
5.2 lnc-SLC16A11-7:20