Transcript: lnc-SLC16A3-2:1

Basic information

LNCipedia transcript ID: lnc-SLC16A3-2:1 
LNCipedia gene ID: lnc-SLC16A3-2
Ensembl Gene ID: ENSG00000264548
Ensembl Transcript ID: ENST00000581303
Location (hg38): chr17:82214227-82217352
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2368 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581303.1; RP13-516M14.2-001; OTTHUMT00000442627.1; NONHSAT056650
Alternative gene names: ENSG00000264548.1; RP13-516M14.2; OTTHUMG00000178600.1; AC132872.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.585 non-coding 
CPAT coding probability 29.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC16A3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC16A3-2:1
4.0 lnc-SLC16A3-2:1
4.1 lnc-SLC16A3-2:1
5.0 lnc-SLC16A3-2:1
5.1 lnc-TSPAN10-49:5
5.2 lnc-SLC16A3-2:1