Transcript: lnc-SLC16A3-4:1

Basic information

LNCipedia transcript ID: lnc-SLC16A3-4:1 
LNCipedia gene ID: lnc-SLC16A3-4
Ensembl Gene ID: ENSG00000266654
Ensembl Transcript ID: ENST00000582774
Location (hg38): chr17:82160056-82160452
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 345 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582774.1; RP11-1376P16.1-001; OTTHUMT00000442467.1; NONHSAT056647
Alternative gene names: ENSG00000266654.1; RP11-1376P16.1; OTTHUMG00000178561.1; AC129510.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.2773 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC16A3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC16A3-4:1
4.0 lnc-SLC16A3-4:1
4.1 lnc-SLC16A3-4:1
5.0 lnc-SLC16A3-4:1
5.1 lnc-TSPAN10-45:1
5.2 lnc-SLC16A3-4:1