Transcript: lnc-SLC16A7-2:1

Basic information

LNCipedia transcript ID: lnc-SLC16A7-2:1 
LNCipedia gene ID: lnc-SLC16A7-2
Location (hg38): chr12:60092864-60095851
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 769 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000552378; ENST00000552378.1; RP11-316A16.1-001; OTTHUMT00000406593.1; NONHSAT029058
Alternative gene names: ENSG00000257294; RP11-316A16.1; ENSG00000257294.1; OTTHUMG00000169926.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.7187 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC16A7-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC16A7-2:1
3.1 lnc-SLC16A7-2:1
4.0 lnc-SLC16A7-2:1
4.1 lnc-SLC16A7-2:1
5.0 lnc-SLC16A7-2:1
5.1 lnc-RXYLT1-24:1
5.2 lnc-SLC16A7-2:1