Transcript: lnc-SLC19A1-3:2

Basic information

LNCipedia transcript ID: lnc-SLC19A1-3:2 
LNCipedia gene ID: lnc-SLC19A1-3
RefSeq ID: NR_038876
Location (hg38): chr21:45827841-45836419
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3586 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT082996; NR_038876; NR_038876.1
Alternative gene names: LOC100129027


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 31.6505 non-coding 
CPAT coding probability 15.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC19A1-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC19A1-3:2
4.0 lnc-SLC19A1-3:2
4.1 lnc-SLC19A1-3:2
5.0 lnc-SLC19A1-3:2
5.1 lnc-SLC19A1-3:2
5.2 lnc-SLC19A1-3:2