Transcript: lnc-SLC19A1-7:6

Basic information

LNCipedia transcript ID: lnc-SLC19A1-7:6 
LNCipedia gene ID: lnc-SLC19A1-7
Location (hg38): chr21:45403696-45405540
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 982 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000057003.1|HBMT00000928261.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -146.0025 non-coding 
CPAT coding probability 17.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC19A1-7:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC19A1-7:6
5.0 lnc-SLC19A1-7:6
5.1 lnc-SLC19A1-7:6
5.2 lnc-SLC19A1-7:6