Transcript: lnc-SLC1A1-11:1

Basic information

LNCipedia transcript ID: lnc-SLC1A1-11:1 
LNCipedia gene ID: lnc-SLC1A1-11
Location (hg38): chr9:3888646-3891247
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 729 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: refGeneNc_2411_NR_026663
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.8384 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC1A1-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC1A1-11:1
4.0 lnc-SLC1A1-11:1
4.1 lnc-SLC1A1-11:1
5.0 lnc-SLC1A1-11:1
5.1 lnc-RECK-279:1
5.2 lnc-SLC1A1-11:1