Transcript: lnc-SLC1A2-2:1

Basic information

LNCipedia transcript ID: lnc-SLC1A2-2:1 
LNCipedia gene ID: lnc-SLC1A2-2
Ensembl Gene ID: ENSG00000255521
Ensembl Transcript ID: ENST00000528366
Location (hg38): chr11:35132655-35138032
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1102 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528366.1; RP4-607I7.1-001; OTTHUMT00000389172.1; NONHSAT018776
Alternative gene names: ENSG00000255521.1; RP4-607I7.1; OTTHUMG00000166326.1; AL356215.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.4838 non-coding 
CPAT coding probability 9.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC1A2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC1A2-2:1
4.0 lnc-SLC1A2-2:1
4.1 lnc-SLC1A2-2:1
5.0 lnc-SLC1A2-2:1
5.1 lnc-TRAF6-16:3
5.2 lnc-SLC1A2-2:1