Transcript: lnc-SLC1A2-2:3

Basic information

LNCipedia transcript ID: lnc-SLC1A2-2:3 
LNCipedia gene ID: lnc-SLC1A2-2
Location (hg38): chr11:35128884-35136537
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 229 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019616; NONHSAT018775
Alternative gene names: XLOC_009416; linc-APIP-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -542.6856 non-coding 
CPAT coding probability 12.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC1A2-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC1A2-1:1
3.1 lnc-SLC1A2-2:3
4.0 lnc-SLC1A2-2:3
4.1 lnc-SLC1A2-2:3
5.0 lnc-SLC1A2-2:3
5.1 lnc-TRAF6-16:6
5.2 lnc-SLC1A2-2:3