Transcript: lnc-SLC22A11-2:1

Basic information

LNCipedia transcript ID: lnc-SLC22A11-2:1 
LNCipedia gene ID: lnc-SLC22A11-2
Ensembl Gene ID: ENSG00000232500
Ensembl Transcript ID: ENST00000444862
Location (hg38): chr11:64500853-64505386
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 522 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00019145; ENST00000444862; ENST00000444862.1; AP005273.1-001; OTTHUMT00000141967.1; NONHSAT021999
Alternative gene names: XLOC_009159; linc-SLC22A11-1; ENSG00000232500; AP005273.1; ENSG00000232500.1; OTTHUMG00000066367.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.0858 non-coding 
CPAT coding probability 2.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC22A11-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AP003774.4.1-3:1
3.1 lnc-AP003774.4.1-2:1
4.0 lnc-AP003774.4.1-2:1
4.1 lnc-AP003774.4.1-2:1
5.0 lnc-AP003774.4.1-2:1
5.1 lnc-PPP2R5B-26:1
5.2 lnc-SLC22A11-2:1