Transcript: lnc-SLC22A18-2:2

Basic information

LNCipedia transcript ID: lnc-SLC22A18-2:2 
LNCipedia gene ID: lnc-SLC22A18-2
Ensembl Gene ID: ENSG00000183562
Ensembl Transcript ID: ENST00000332881
Location (hg38): chr11:2989863-2991344
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1482 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000332881.3
Alternative gene names: ENSG00000183562.3; CTC-343N3.1; AC131971.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -48.7582 non-coding 
CPAT coding probability 4.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC22A18-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC131971.1-2:1
4.1 lnc-AC131971.1-2:1
5.0 lnc-AC131971.1-2:1
5.1 lnc-OR51M1-61:1
5.2 lnc-SLC22A18-2:2