Transcript: lnc-SLC22A31-2:1

Basic information

LNCipedia transcript ID: lnc-SLC22A31-2:1 
LNCipedia gene ID: lnc-SLC22A31-2
Ensembl Gene ID: ENSG00000261546
Ensembl Transcript ID: ENST00000562782
Location (hg38): chr16:89113175-89115279
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2105 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562782.1; CTD-2555A7.3-001; OTTHUMT00000431797.1; NONHSAT144464
Alternative gene names: ENSG00000261546.1; CTD-2555A7.3; OTTHUMG00000176346.1; AC135782.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.1424 non-coding 
CPAT coding probability 54.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC22A31-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CBFA2T3-2:1
4.0 lnc-CBFA2T3-2:1
4.1 lnc-CBFA2T3-2:1
5.0 lnc-CBFA2T3-2:1
5.1 lnc-KLHDC4-43:1
5.2 lnc-SLC22A31-2:1