Transcript: lnc-SLC22A31-6:5

Basic information

LNCipedia transcript ID: lnc-SLC22A31-6:5 
LNCipedia gene ID: lnc-SLC22A31-6
Location (hg38): chr16:89198176-89200121
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1149 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000568161.1; RP11-46C24.8-002; OTTHUMT00000430649.1
Alternative gene names: ENSG00000259803.1; RP11-46C24.8; OTTHUMG00000175615.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.4415 non-coding 
CPAT coding probability 98.21% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC22A31-6:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD11-6:2
4.0 lnc-ANKRD11-6:2
4.1 lnc-ANKRD11-6:2
5.0 lnc-ANKRD11-6:2
5.1 lnc-KLHDC4-45:5
5.2 lnc-SLC22A31-6:5