Transcript: lnc-SLC22A5-6:5

Basic information

LNCipedia transcript ID: lnc-SLC22A5-6:5 
LNCipedia gene ID: lnc-SLC22A5-6
Ensembl Gene ID: ENSG00000197536
Ensembl Transcript ID: ENST00000407797
Location (hg38): chr5:132410989-132476010
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1570 bp
Exons: 5
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000407797.6
Alternative gene names: ENSG00000197536.11; C5orf56


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -123.3795 non-coding 
CPAT coding probability 36.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-SLC22A5-6:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-PDLIM4-6:6
5.1 lnc-PDLIM4-6:6
5.2 lnc-SLC22A5-6:5