Transcript: lnc-SLC24A1-1:1

Basic information

LNCipedia transcript ID: lnc-SLC24A1-1:1 
LNCipedia gene ID: lnc-SLC24A1-1
Location (hg38): chr15:65850875-65860343
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 808 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023444; NONHSAT046767
Alternative gene names: XLOC_011289; linc-RAB11A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.2914 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC24A1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC24A1-1:1
3.1 lnc-SLC24A1-1:1
4.0 lnc-SLC24A1-1:1
4.1 lnc-SLC24A1-1:1
5.0 lnc-SLC24A1-1:1
5.1 lnc-MAP2K1-10:3
5.2 lnc-SLC24A1-1:1