Transcript: lnc-SLC25A48-7:1

Basic information

LNCipedia transcript ID: lnc-SLC25A48-7:1 
LNCipedia gene ID: lnc-SLC25A48-7
Ensembl Gene ID: ENSG00000249639
Ensembl Transcript ID: ENST00000510230
Location (hg38): chr5:135450613-135458697
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 504 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510230.1; CTB-138E5.1-001; OTTHUMT00000371695.1; NONHSAT103910
Alternative gene names: ENSG00000249639.1; CTB-138E5.1; OTTHUMG00000163110.1; AC022092.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.6083 non-coding 
CPAT coding probability 10.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC25A48-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CTC-203F4.1.1-1:1
4.0 lnc-CTC-203F4.1.1-1:1
4.1 lnc-CTC-203F4.1.1-1:1
5.0 lnc-CTC-203F4.1.1-1:1
5.1 lnc-PDLIM4-76:2
5.2 lnc-SLC25A48-7:1