Transcript: lnc-SLC25A5-1:1

Basic information

LNCipedia transcript ID: lnc-SLC25A5-1:1 
LNCipedia gene ID: lnc-SLC25A5-1
Ensembl Gene ID: ENSG00000237903
Ensembl Transcript ID: ENST00000414435
Location (hg38): chrX:119422917-119423547
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 433 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414435.1; RP3-404F18.5-001; OTTHUMT00000058035.1; NONHSAT138314
Alternative gene names: ENSG00000237903.1; RP3-404F18.5; OTTHUMG00000022274.1; AC004000.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.4451 non-coding 
CPAT coding probability 0.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC25A5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC25A5-1:1
4.0 lnc-SLC25A5-1:1
4.1 lnc-SLC25A5-1:1
5.0 lnc-SLC25A5-1:1
5.1 lnc-TEX13C-79:1
5.2 lnc-SLC25A5-1:1