Transcript: lnc-SLC25A6-1:2

Basic information

LNCipedia transcript ID: lnc-SLC25A6-1:2 
LNCipedia gene ID: lnc-SLC25A6-1
Location (hg38): chrX:1396427-1398959
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 357 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017028; ENST00000434938; ENST00000434938.1; LINC00106-002; OTTHUMT00000337679.1; NONHSAT136052
Alternative gene names: XLOC_008099; linc-SLC25A6-2; ENSG00000236871; NCRNA00106; ENSG00000236871.1; LINC00106; OTTHUMG00000021061.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.9326 non-coding 
CPAT coding probability 2.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC25A6-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC25A6-1:2
3.1 lnc-SLC25A6-1:2
4.0 lnc-SLC25A6-1:2
4.1 lnc-SLC25A6-1:2
5.0 lnc-SLC25A6-1:2
5.1 lnc-PCSK1N-266:2
5.2 lnc-SLC25A6-1:2