Transcript: lnc-SLC26A3-1:5

Basic information

LNCipedia transcript ID: lnc-SLC26A3-1:5 
LNCipedia gene ID: lnc-SLC26A3-1
Ensembl Gene ID: ENSG00000241764
Ensembl Transcript ID: ENST00000609979
Location (hg38): chr7:107742969-107744050
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 553 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609979.1
Alternative gene names: ENSG00000241764.3; AC002467.7; AC002467.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.1579 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC26A3-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC26A3-1:5
4.0 lnc-SLC26A3-1:5
4.1 lnc-SLC26A3-1:5
5.0 lnc-SLC26A3-1:5
5.1 lnc-NRCAM-10:9
5.2 lnc-SLC26A3-1:5

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