Transcript: lnc-SLC29A4-1:2

Basic information

LNCipedia transcript ID: lnc-SLC29A4-1:2 
LNCipedia gene ID: lnc-SLC29A4-1
Ensembl Gene ID: ENSG00000188365
Ensembl Transcript ID: ENST00000455866
Location (hg38): chr7:5419846-5423122
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 753 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455866.1; AC092171.2-001; OTTHUMT00000324030.1; NONHSAT118915
Alternative gene names: ENSG00000188365.3; AC092171.2; OTTHUMG00000151810.1; AC092171.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.5399 non-coding 
CPAT coding probability 5.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-SLC29A4-1:2 yes no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC29A4-1:2
4.0 lnc-SLC29A4-1:2
4.1 lnc-SLC29A4-1:2
5.0 lnc-SLC29A4-1:2
5.1 lnc-SLC29A4-1:2
5.2 lnc-SLC29A4-1:2